Publications

† = co-first author

2025

1. Clarke, H.A.†, Ma, X.†, Shedlock, C.J.† et al. Spatial mapping of the brain metabolome lipidome and glycome. Nat Commun 16, 4373 (2025). https://doi.org/10.1038/s41467-025-59487-7

2. Ma, X.†, Shedlock, C.J.†, Medina, T.† et al. (2025) AI-driven framework to map the brain metabolome in three dimensions. Nature Metabolism. https://doi.org/10.1038/s42255-025-01242-9

3. Clarke, H.A., Hawkinson, T.R.,…, Ma, X. et al. (2025) Glycogen drives tumour initiation and progression in lung adenocarcinoma. Nature Metabolism. https://doi.org/10.1038/s42255-025-01243-8

2024

1. Ma, X., Thela, S. R., Zhao, F., Yao, B., Wen, Z., Jin, P., Zhao, J., \& Chen, L. (2024). Deep5hmC: predicting genome-wide 5-hydroxymethylcytosine landscape via a multimodal deep learning model. Bioinformatics, 40 (9), btae528. https://doi.org/10.1093/bioinformatics/btae528

2. Zhao, F., Ma, X., Yao, B., Lu, Q., \& Chen, L. (2024). Scada: A novel statistical method for differential analysis of single-cell chromatin accessibility sequencing data. PLOS Computational Biology, 20(8), 1–28. https://doi.org/10.1371/journal.pcbi.1011854